Signal Peptide HMM

A Profile Hidden Markov Model for Signal Peptides
Generated by HMMER

View the paper in PDF format by Zemin Zhang and William I. Wood (Bioinformatics, 2003, Vol. 19, 307-308).

The following related data sets, HMM model, and Perl scripts are freely available for non-commercial use.

HMM model for signal peptide
Additional information about data collection.
Human sig+ Swiss-Prot records:
- list
- sequences
Mouse sig+ Swiss-Prot records:
- list
- sequences
Expanded sig+ human Swiss-Prot records:
- list
- sequences
Expanded sig+ mouse Swiss-Prot records:
- list
- sequences
Human sig- Swiss-Prot records:
- list
- sequences
Mouse sig- Swiss-Prot records:
- list
- sequences
List of Pfam domains present in extracellular regions
Perl script for aligning signal peptides
Perl wrapper for batch signal HMM analysis.